PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G010100.1
Common NameB456_007G010100, LOC105801771
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 214aa    MW: 23686.7 Da    PI: 7.4379
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G010100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-184898155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        + ++GVr++  +g+Wv+e+r+p++   + r++lg+f t+e+Aa+a++ a+++l+g
  Gorai.007G010100.1 48 PVFRGVRRRN-SGKWVCEVREPYK---KSRIWLGTFPTEEMAARAHDVAALALRG 98
                        579****888.8*********765...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-134898IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3049108IPR001471AP2/ERF domain
PROSITE profilePS5103222.24749106IPR001471AP2/ERF domain
SMARTSM003808.1E-2949112IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-2149108IPR016177DNA-binding domain
PRINTSPR003673.3E-85061IPR001471AP2/ERF domain
CDDcd000184.19E-2950108No hitNo description
PRINTSPR003673.3E-87288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MVSSPMSDSG SGNGASRPPN FSDEDVMLAS CYPKKRAGRK KFRETRHPVF RGVRRRNSGK  60
WVCEVREPYK KSRIWLGTFP TEEMAARAHD VAALALRGRL ACLNFADSAW RLPVPASTDP  120
KDIQKAAAEA AEAFRPVDSA GDGSKTAEKT AVEGTKESEE VFYLDEEAVF GREKFLANMA  180
AGMMMSPPHS GYEKDEQEFE FADGYVRLWS YSI*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2332510.0KR233251.1 Gossypium barbadense C-repeat binding factor 2-like protein (CBF2L) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012488507.11e-157PREDICTED: dehydration-responsive element-binding protein 1D-like
SwissprotQ9FJ933e-76DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0D2S4X31e-157A0A0D2S4X3_G
TrEMBLA0A0N9K7B11e-157A0A0N9K7B1_G
STRINGPOPTR_0012s13870.11e-90(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.16e-57C-repeat-binding factor 4
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]